Selected Publications
1,785 total citations | h-index: 9
2024
Lange M., Granados AA., et al. Zebrahub: Multimodal Zebrafish Developmental Atlas Reveals the State-Transition Dynamics of Late-Vertebrate Pluripotent Axial Progenitors. Cell 187(23). [120 citations]
Granados AA., Kanrar N., Elowitz MB. Combinatorial expression motifs in signaling pathways. Cell Genomics 4(1).
2023
Granados AA., et al. Single-nuclei characterization of pervasive transcriptional signatures across organs in response to COVID-19. eLife 12.
2022
Tabula Sapiens Consortium. The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans. Science 376(6594). [1,065 citations]
2021
Chow KHK., Budde MW., Granados AA., et al. Imaging cell lineage with a synthetic digital recording system. Science 372(6538). [137 citations]
Luecken MD., et al. incl. Granados AA. A sandbox for prediction and integration of DNA, RNA, and proteins in single cells. NeurIPS 2021. [178 citations]
Gong W., Granados AA., et al. Benchmarked approaches for reconstruction of in vitro cell lineages. Cell Systems 12(8).
2018
Granados AA., et al. Distributed and dynamic intracellular organization of extracellular information. PNAS 115(23).
2017
Granados AA., Crane MM., et al. Distributing tasks via multiple pathways increases cellular survival in stress. eLife 6.
Community Contributions
- DREAM Challenge Organizer (2020): Single-cell lineage inference benchmark, 10 international teams
- NeurIPS Competition (2021): Data infrastructure for multi-modal single-cell integration
- Open Source: Zebrahub atlas and analysis tools